PIntron

PIntron is a novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence.

Project Page

Please refer to the main project page for download, installation, and usage instructions.

Reference

Please cite the following article when using PIntron:
Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, and Paola Bonizzoni.
PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text.
BMC Bioinformatics, 13(S5), S2, (2012). doi:10.1186/1471-2105-13-S5-S2