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Experimental Algorithmics Lab – AlgoLab

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Software

Our programs are under the AlgoLab organization on Github.

Alternative splicing
  • ASGAL
  • PIntron
  • ASPic and ASPicDB
Evolution and Comparative Genomics
  • gppf
Assembly and Text indexing
  • bwt-lcp-em
  • LSG
  • FSG
  • pygfa
Haplotype Inference
  • HapChat
  • HapCol
  • reHCstar
  • HeuMCHC
Sequence Comparison

News

  • Advanced Techniques for Combinatorial Algorithms (2018) January 7, 2018
  • Workshop on Combinatorial Algorithms in Bioinformatics December 19, 2017
  • AlgoDay 2017 July 15, 2017
  • Special session on Algorithmics for biology June 15, 2017
  • Invited talk at CiE 2017 June 15, 2017
  • Workshop on Graph Assembly Algorithms for omics data October 26, 2016
  • Tesi: Algoritmi per l’assemblaggio di multiple stringhe di DNA July 18, 2016
  • Tesi: Euristiche applicate all’assemblaggio di aplotipi July 18, 2016
  • Tesi: Algoritmi di indicizzazione del grafo del pangenoma April 28, 2016
  • Advanced Techniques for Combinatorial Algorithms February 5, 2016

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