ASPic

ASPic is a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences (such as mRNAs and/or ESTs), while ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm, and to the functional annotation of predicted isoforms.

Reference

Please cite the following article when using ASPic or ASPicDB:

Pier Luigi Martelli, Mattia D’Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D’Erchia, Paolo D’Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole:
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Research 39(Database-Issue): 80-85 (2011) [doi:10.1093/nar/gkq1073]